PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GRAS
Protein Properties Length: 407aa    MW: 46050.5 Da    PI: 6.5114
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73590.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS268.22.7e-82194052373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv.selykalppsetsekn....sseelaalkl..fsevsPilkf 93 
                 ++lL+ cA a++s++++laq++L+ l+++a  dgd++qRla  f++AL +r ++s+ s+l  a++    +  +      +++++++l  f++++P+++f
  EPS73590.1  19 ERLLTYCAAAIESNEATLAQQILWVLNNIAPADGDSNQRLAWGFLRALISRAVKSGnSKLLTAVADVLGDGVEaairRNHRFSIMELagFVDLTPWHRF 117
                 689*************************************************9954144555543333322223444334444444477********** PP

        GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl...va 183
                 ++ +aN a+ eaveg   +Hi+D++ ++++Q p+L++ +a+R   ++p  +++T+ ++   +    +  ++ e+g++L++fA+  ++++ef+++   ++
  EPS73590.1 118 GFTAANAAVIEAVEGYPVIHIVDLSSTHCMQIPTLIDDIATRMahSPPSLIKLTVAARTGGEipplRDFSYDELGWKLTNFARIRNLTLEFRPVpctHS 216
                 ******************************************974455589*****995555999999**************************88666 PP

        GRAS 184 krledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                 + +++l +++L+++p    +Eal+ n+++ lh ++      e  rd++L+  +sl+P+ vvvve+++d++s+++++r+ +a +y +  +ds+e+ +   
  EPS73590.1 217 DGFSSL-IHRLQIQPrdhrREALVLNCHMTLHCIP------ECLRDAFLRSARSLNPRAVVVVEEDVDLSSADLVQRVRSAYNYLWIQYDSMETVV--- 305
                 677777.999999999999***************9......44567*************************************************7... PP

        GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.....sgslvlgWkdrpLvsvS 371
                  ++r +vE+e + ++i+nvva+eg  r+er e +++W +r+++aG+++v+++e +++++k +l++++ ++g + eee      + lvl+Wk+++++++S
  EPS73590.1 306 WRQREWVEAE-IWWKIENVVAQEGWGRVERAEAKGRWVQRMRKAGYGSVRFGEATVEEVKGMLEEHAaGWGLKREEEneeqgIHHLVLTWKGHNVLFAS 403
                 899*******.********************************************************99999999774443345799************ PP

        GRAS 372 aW 373
                 aW
  EPS73590.1 404 AW 405
                 ** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.7081380IPR005202Transcription factor GRAS
PfamPF035149.2E-8019405IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
RTPPWPDFPT SKSDADCMER LLTYCAAAIE SNEATLAQQI LWVLNNIAPA DGDSNQRLAW  60
GFLRALISRA VKSGNSKLLT AVADVLGDGV EAAIRRNHRF SIMELAGFVD LTPWHRFGFT  120
AANAAVIEAV EGYPVIHIVD LSSTHCMQIP TLIDDIATRM AHSPPSLIKL TVAARTGGEI  180
PPLRDFSYDE LGWKLTNFAR IRNLTLEFRP VPCTHSDGFS SLIHRLQIQP RDHRREALVL  240
NCHMTLHCIP ECLRDAFLRS ARSLNPRAVV VVEEDVDLSS ADLVQRVRSA YNYLWIQYDS  300
METVVWRQRE WVEAEIWWKI ENVVAQEGWG RVERAEAKGR WVQRMRKAGY GSVRFGEATV  360
EEVKGMLEEH AAGWGLKREE ENEEQGIHHL VLTWKGHNVL FASAWAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-16154052374GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303852.21e-174PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-161SCL32_ARATH; Scarecrow-like protein 32
TrEMBLS8D2G00.0S8D2G0_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_07s0129g00340.t011e-173(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-156GRAS family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]